SNP Profiles matching RB 33 /3 [BRA]

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_Input profile	TT	CC	CC	GT	CT	GG	AC	CG	AA	AG	GG	AT	GG	AG
1._AMAZ_12	_	_	CC	GT	CT	_	_	CG	AA	_	_	AT	_	AG
2._AMAZ_12	_	_	_	GT	CT	_	_	CG	AA	_	_	AT	_	AG
3._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	_	CG	AA	AG	GG	AT	GG	AG
4._GC-05-158-4-11	TT	CC	_	GT	CT	GG	_	CG	AA	AG	GG	AT	GG	AG
5._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	_	_	AT	_	AG
6._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	_	_	AT	_	AG
7._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	_	_	AT	_	AG
8._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	_	_	AT	_	AG
9._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	_	_	AT	_	AG
10._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	_	_	AT	_	AG
11._AMAZ_12	_	_	CC	GT	_	_	AA	CG	AA	_	_	AT	_	AG
12._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	AA	CG	AA	AG	GG	AT	GG	AG
13._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	AA	CG	AA	AG	GG	AT	GG	AG
14._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	AA	CG	AA	AG	GG	AT	GG	AG
15._GC-05-010-1-10	TT	CC	CC	GT	CT	GG	AA	CG	AA	AG	GG	AT	GG	AG
16._GC-05-158-4-11	TT	CC	CC	GT	CT	GG	AA	CG	AA	AG	GG	AT	GG	AG
17._GC-05-158-4-11	TT	CC	CC	GT	_	GG	AA	CG	AA	AG	GG	AT	GG	AG
18._GC-05-158-4-11	TT	CC	CC	GT	CT	GG	AA	CG	AA	AG	GG	AT	GG	AG
19._GC-05-158-4-11	TT	CC	CC	GT	CT	GG	AA	CG	AA	AG	GG	AT	GG	AG
20._AMAZ_12	_	_	CC	GT	CT	_	AA	CG	AA	_	_	AT	_	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
1._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_
2._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_
3._GC-05-010-1-10	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
4._GC-05-158-4-11	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
5._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_
6._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_
7._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_
8._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_
9._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_
10._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_
11._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_
12._GC-05-010-1-10	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
13._GC-05-010-1-10	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
14._GC-05-010-1-10	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
15._GC-05-010-1-10	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
16._GC-05-158-4-11	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
17._GC-05-158-4-11	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
18._GC-05-158-4-11	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	_
19._GC-05-158-4-11	AC	CT	GT	CC	AC	CC	CT	CT	GT	AG	TT	CC	GG	CC
20._AMAZ_12	AC	CT	GT	CC	AC	_	CT	_	GT	_	_	_	GG	_

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	CT	AA	CC	TT	GG	GG	TT	CT	CT	CC	CG	AA	X_X	X_X
1._AMAZ_12	CT	AA	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X
2._AMAZ_12	CT	AA	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X
3._GC-05-010-1-10	CT	AA	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
4._GC-05-158-4-11	CT	AA	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
5._AMAZ_12	CT	AA	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X
6._AMAZ_12	CT	AA	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X
7._AMAZ_12	CT	AA	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X
8._AMAZ_12	CT	AA	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X
9._AMAZ_12	CT	AA	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X
10._AMAZ_12	CT	AA	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X
11._AMAZ_12	CT	AA	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X
12._GC-05-010-1-10	CT	AA	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
13._GC-05-010-1-10	CT	AA	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
14._GC-05-010-1-10	CT	AA	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
15._GC-05-010-1-10	CT	AA	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
16._GC-05-158-4-11	CT	AA	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
17._GC-05-158-4-11	CT	AA	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
18._GC-05-158-4-11	CT	AA	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
19._GC-05-158-4-11	CT	AG	CC	TT	GG	GG	TT	TT	CT	CC	CG	AA	X_X	X_X
20._AMAZ_12	CT	AG	_	TT	_	_	_	_	_	CC	CG	AA	X_X	X_X

Input profile: RB_33_/3_[BRA] RUQ_40

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._AMAZ_12

identical
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._AMAZ_12

identical
20 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 5

Dapeng Zhang, 2016

3._AMAZ_12 GC-05-010-1-10

98.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

4._AMAZ_12 GC-05-158-4-11

98.7 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._AMAZ_12

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 1 > FP

Dapeng Zhang, 2016

6._AMAZ_12

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 3

Dapeng Zhang, 2016

7._AMAZ_12

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 4 > FP

Dapeng Zhang, 2016

8._AMAZ_12

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 2 > FP

Dapeng Zhang, 2016

9._AMAZ_12

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 5

Dapeng Zhang, 2016

10._AMAZ_12

97.7 %
22 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5110 3

Dapeng Zhang, 2016

11._AMAZ_12

97.6 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5411 2 > FP

Dapeng Zhang, 2016

12._AMAZ_12 GC-05-010-1-10

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

13._AMAZ_12 GC-05-010-1-10

97.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

14._AMAZ_12 GC-05-010-1-10

97.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

15._AMAZ_12 GC-05-010-1-10

97.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

16._AMAZ_12 GC-05-158-4-11

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP4

17._AMAZ_12 GC-05-158-4-11

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP3

18._AMAZ_12 GC-05-158-4-11

97.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

19._AMAZ_12 GC-05-158-4-11

96.3 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

20._AMAZ_12

95.5 %
22 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5411 4

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP329
11	TcSNP364	12	TcSNP372	13	TcSNP448	14	TcSNP469	15	TcSNP529
16	TcSNP534	17	TcSNP560	18	TcSNP577	19	TcSNP591	20	TcSNP602
21	TcSNP619	22	TcSNP702	23	TcSNP723	24	TcSNP731	25	TcSNP799
26	TcSNP823	27	TcSNP872	28	TcSNP878	29	TcSNP891	30	TcSNP998
31	TcSNP999	32	TcSNP1060	33	TcSNP1063	34	TcSNP1111	35	TcSNP1126
36	TcSNP1309	37	TcSNP1439	38	TcSNP1442	39	TcSNP1458	40	TcSNP1484